GenoScope is a modular agent-based model designed to simulate how cells respond to environmental stressors or other treatment conditions across species. Genes, treatment conditions, and cell physiology outcomes are represented as interacting agents that influence each other’s behavior over time. Rather than imposing fixed interaction rules, GenoScope initializes with randomized regulatory logic and calibrates rule sets based on empirical data. Calibration is grounded in a common-garden experiment involving 16 mammalian species—including humans, dolphins, bats, and camels—exposed to varying levels of temperature, glucose, and oxygen. This comparative approach enables the identification of mechanisms by which animal cells achieve robustness under extreme environmental conditions.

Non-traditional tools and mediums can provide unique methodological and interpretive opportunities for archaeologists. In this case, the Unreal Engine (UE), which is typically used for games and media, has provided a powerful tool for non-programmers to engage with 3D visualization and programming as never before. UE has a low cost of entry for researchers as it is free to download and has user-friendly “blueprint” tools that are visual and easily extendable. Traditional maritime mobility in the Salish Sea is examined using an agent-based model developed in blueprints. Focusing on the sea canoe travel of the Straits Salish northwestern Washington State and southwest British Columbia. This simulation integrates GIS data to assess travel time between Coast Salish archaeological village locations and archaeologically represented resource gathering areas. Transportation speeds informed by ethnographic data were used to examine travel times for short forays and longer inter-village journeys. The results found that short forays tended to half day to full day trips when accounting for resource gathering activities. Similarly, many locations in the Salish Sea were accessible in long journeys within two to three days, assuming fair travel conditions. While overall transportation costs to reach sites may be low, models such as these highlight the variability in transport risk and cost. The integration of these types of tools, traditionally used for entertainment, can increase the accessibility of modeling approaches to researchers, be expanded to digital storytelling, including aiding in the teaching of traditional ecological knowledge and placenames, and can have wide applications beyond maritime archaeology.

This is v0.01 of a UE5.2.1 agent based model.

An empirically validated agent-based model of circular migration

This model was developed to study the combination of electric vehicles (EVs) and intermitten renewable energy sources. The model presents an EV fleet in a fictional area, divided into a residential area, an office area and commercial area. The area has renewable energy sources: wind and PV solar panels. The agents can be encouraged to charge their electric vehicles at times of renewable energy surplus by introducing different policy interventions. Other interesting variables in the model are the installed renewable energy sources, EV fleet composition and available charging infrastructure. Where possible, use emperical data as input for our model. We expand upon previous models by incorporating environmental self-identity and range anxiety as agent variables.

This agent-based model investigates scapegoating as a social mechanism of crisis management. Inspired by René Girard’s mimetic theory, it simulates how individual tension accumulates and spreads across a small-world network. When tension exceeds certain thresholds, leaders emerge and accuse marginalized agents, who may attempt to transfer blame to substitutes. If scapegoating occurs, collective tension decreases, but victims become isolated while leaders consolidate temporary authority. This simulation provides a conceptual and methodological framework for exploring how collective blame, crisis contagion, and leadership paradoxes emerge in complex networks. It can also be extended with empirical data, such as social media dynamics of online harassment and virtual lynching, offering potential applications for both theoretical research and practical crisis monitoring.

Logônia is a NetLogo model that simulates the growth response of a fictional plant, Logônia, under different climatic conditions. The model uses climate data from WorldClim 2.1 (Fick & Hijmans, 2017) and demonstrates how to integrate the LogoClim model through the LevelSpace extension.

The model was developed according to the FAIR principles for research software (Barker et al., 2022) and is openly available on the CoMSES Network and GitHub.

A general model of human mate choice in which agents are localized in space, interact with close neighbors, and tend to range either near or far. At the individual level, our model uses two oft-used but incompletely understood decision rules: one based on preferences for similar partners, the other for maximally attractive partners.

NearshoreABM simulates whether a region captures the production linkages that nearshoring makes available, or fails to capture them because physical infrastructure and credit supply bind first.

The model runs over the 32 Mexican states at quarterly frequency. Multinational anchor firms decide whether to enter and where to locate, following Melitz selection on heterogeneous productivity under trade-policy uncertainty. Domestic supplier firms decide whether to formalise and whether to invest in quality, and may or may not obtain a contract with an anchor. A banking sector allocates a finite regional credit supply according to observed default risk, serving anchor firms before suppliers.

Electricity and water capacity enter production as non-linear congestion penalties with an engineering-based threshold, so the response of output to demand growth is discontinuous rather than proportional: below the threshold there is no penalty at all, between threshold and capacity the penalty grows quadratically, and above capacity it decays exponentially. Congestion is rivalrous within the quarter, which makes the order of production economically meaningful rather than incidental.

…

ABM focused on examining the dissemination of opinions through a notional terrorist network to generate terrorist attacks caused by drone strikes.

The purpose of this model is to enhance a basic ABM through a simple set of rules identified using the activity-driven models in order to produce more realistic patterns of pedestrian movement.