Computational Model Library

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We seek to improve understanding of roles enzyme play in soil food webs. We created an agent-based simulation of a simple food web that includes enzymatic activity. The model was used in a publication, Moore et al. (in press; Biochemistry).

00 PSoup V1.22 – Primordial Soup

Garvin Boyle | Published Thursday, April 13, 2017

PSoup is an educational program in which evolution is demonstrated, on the desk-top, as you watch. Blind bugs evolve sophisticated heuristic search algorithms to be the best at finding food fast.

Firm explore-exploit of knowledge

Rosanna Garcia | Published Monday, March 28, 2011 | Last modified Saturday, April 27, 2013

The basic premise of the model is to simulate several ‘agents’ going through build-buy cycles: Build: Factories follow simple rules of strategy in the allocation of resources between making exploration and exploitation type products. Buy: Each of two types of Consumers, early-adopters and late adopters, follow simple purchase decision rules in deciding to purchase a product from one of two randomly chosen factories. Thus, the two working ‘agents’ of the model are ‘factories’ and […]

The spatially-explicit AgriculTuralLandscApe Simulator (ATLAS) simulates realistic spatial-temporal crop availability at the landscape scale through crop rotations and crop phenology.

Mast seeding model

Lucia Tamburino Giangiacomo Bravo | Published Saturday, September 08, 2012 | Last modified Saturday, April 27, 2013

Purpose of the model is to perform a “virtual experiment” to test the predator satiation hypothesis, advanced in literature to explain the mast seeding phenomenon.

ManPest

François Rebaudo | Published Tuesday, February 25, 2014 | Last modified Wednesday, August 27, 2014

The purpose of the model is to explore the impacts of global change on the ability of a community of farmers to adapt their practices to an agricultural pest.

Eixample-MAS Traffic Simulation

Àlex Pardo Fernandez David Sánchez Pinsach | Published Tuesday, January 22, 2013 | Last modified Saturday, April 27, 2013

This MAS simulates the traffic of Barcelona Eixample. Uses a centralized AI system in order to control the traffic lights. Car agents are reactive and have no awareness of the intelligence of the system. They (try to) avoid collisions.

This code simulates the WiFi user tracking system described in: Thron et al., “Design and Simulation of Sensor Networks for Tracking Wifi Users in Outdoor Urban Environments”. Testbenches used to create the figures in the paper are included.

Peer reviewed Horse population dynamics

Nika Galic | Published Tuesday, November 12, 2013 | Last modified Wednesday, October 29, 2014

This model investigates the link between prescribed growth in body size, population dynamics and density dependence through population feedback on available resources.

SONG - Simulation of Network Growth

D Levinson | Published Monday, August 29, 2011 | Last modified Saturday, April 27, 2013

SONG is a simulator designed for simulating the process of transportation network growth.

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