Computational Model Library

Peer reviewed HyperMu’NmGA - Effect of Hypermutation Cycles in a NetLogo Minimal Genetic Algorithm

Cosimo Leuci | Published Tue Oct 27 21:15:40 2020 | Last modified Sun Jul 31 09:08:14 2022

A minimal genetic algorithm was previously developed in order to solve an elementary arithmetic problem. It has been modified to explore the effect of a mutator gene and the consequent entrance into a hypermutation state. The phenomenon seems relevant in some types of tumorigenesis and in a more general way, in cells and tissues submitted to chronic sublethal environmental or genomic stress.
For a long time, some scholars suppose that organisms speed up their own evolution by varying mutation rate, but evolutionary biologists are not convinced that evolution can select a mechanism promoting more (often harmful) mutations looking forward to an environmental challenge.
The model aims to shed light on these controversial points of view and it provides also the features required to check the role of sex and genetic recombination in the mutator genes diffusion.

This paper introduces an experimental and exploratory approach, combining game theory and Genetic Algorithms to create a model to simulate evolutionary economic learning. The objective of this paper is to document the implementation of a genetic algorithm as a simulator for economic learning, then analyze how strategic behavior affects the evolution towards optimal outcomes, departing from different starting points and potentially transforming conflict into harmonious scenarios. For this purpose, the introduced construct aimed at allowing for the evaluation of different strategy selection methods and game types. 144 unique 2x2 games, and three distinct strategy selection rules: Nash equilibrium, Hurwicz rule and a Random selection method were used in this study. The particularity of this paper is that rather than changing the strategies themselves or player-specific features, the introduced genetic algorithm changes the games based on the player payoffs. The outcome indicated optimal player scenarios for both The Nash equilibrium and Hurwicz rules strategies, the first being the best performing strategy. The random selection method fails to converge to optimal values in most of the populations, acting as a control feature and reinforcing that strategic behavior is necessary for the evolutionary learning process. We documented also two additional observations. First, the games are often transformed in such a way that agents can coordinate their strategies to achieve a stable optimal equilibrium. And second, we observed the mutation of the populations of games into sets of fewer (repeating) isomorphic games featuring strong characteristics of previous games.

Large-scale land acquisitions (LSLAs) threaten smallholder livelihoods globally. Despite more than a decade of research on the LSLA phenomenon, it remains a challenge to identify governance conditions that may foster beneficial outcomes for both smallholders and investors. One potentially promising strategy toward this end is contract farming (CF), which more directly involves smallholder households in commodity production than conditions of acquisition and displacement.

To improve understanding of how CF may mediate the outcomes of LSLAs, we developed an agent-based model of smallholder livelihoods, which we used as a virtual laboratory to experiment on a range of hypothetical LSLA and CF implementation scenarios.

The model represents a community of smallholder households in a mixed crop-livestock system. Each agent farms their own land and manages a herd of livestock. Agents can also engage in off-farm employment, for which they earn a fixed wage and compete for a limited number of jobs. The principal model outputs include measures of household food security (representing access to a single, staple food crop) and agricultural production (of a single, staple food crop).

Peer reviewed MGA - Minimal Genetic Algorithm

Cosimo Leuci | Published Tue Sep 3 07:52:29 2019 | Last modified Thu Jan 30 08:42:08 2020

Genetic algorithms try to solve a computational problem following some principles of organic evolution. This model has educational purposes; it can give us an answer to the simple arithmetic problem on how to find the highest natural number composed by a given number of digits. We approach the task using a genetic algorithm, where the candidate solutions to the problem are represented by agents, that in logo programming environment are usually known as “turtles”.

Peer reviewed Flibs'NLogo - An elementary form of evolutionary cognition

Cosimo Leuci | Published Thu Jan 30 08:34:19 2020

Flibs’NLogo implements in NetLogo modelling environment, a genetic algorithm whose purpose is evolving a perfect predictor from a pool of digital creatures constituted by finite automata or flibs (finite living blobs) that are the agents of the model. The project is based on the structure described by Alexander K. Dewdney in “Exploring the field of genetic algorithms in a primordial computer sea full of flibs” from the vintage Scientific American column “Computer Recreations”
As Dewdney summarized: “Flibs […] attempt to predict changes in their environment. In the primordial computer soup, during each generation, the best predictor crosses chromosomes with a randomly selected flib. Increasingly accurate predictors evolve until a perfect one emerges. A flib […] has a finite number of states, and for each signal it receives (a 0 or a 1) it sends a signal and enters a new state. The signal sent by a flib during each cycle of operation is its prediction of the next signal to be received from the environment”

Agent-Based Computational Model of the cryptocurrency Bitcoin with a realistic market and transaction system. Bitcoin’s transaction limit (i.e. block size) and Bitcoin generation can be calibrated and optimized for wealth and network’s hashing power by the Non-Dominated Sorted Genetic Algorithm - II.

Peer reviewed Swidden Farming Version 2.0

C Michael Barton | Published Wed Jun 12 23:54:35 2013 | Last modified Wed Sep 3 23:37:34 2014

Model of shifting cultivation. All parameters can be controlled by the user or the model can be run in adaptive mode, in which agents innovate and select parameters.

Irrigation Equity and Efficiency

Andrew Bell | Published Tue Aug 30 18:36:45 2016

The purpose of this model is to examine equity and efficiency in crop production across a system of irrigated farms, as a function of maintenance costs, assessed water fees, and the capacity of farmers to trade water rights among themselves.

In this model, we simulate the navigation behavior of homing pigeons. Specifically we use genetic algorithms to optimize the navigation and flocking parameters of pigeon agents.

Positive feedback can lead to “trapping” in local optima. Adding a simple negative feedback effect, based on ant behaviour, prevents this trapping

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