Computational Model Library

The purpose of the model is to generate coalition structures of different glove games, using a specially designed algorithm. The coalition structures can be are later analyzed by comparing them to core partitions of the game used. Core partitions are coalition structures where no subset of players has an incentive to form a new coalition.

The algorithm used in this model is an advancement of the algorithm found in Collins & Frydenlund (2018). It was used used to generate the results in Vernon-Bido & Collins (2021).

The purpose of the model is to collect information on human decision-making in the context of coalition formation games. The model uses a human-in-the-loop approach, and a single human is involved in each trial. All other agents are controlled by the ABMSCORE algorithm (Vernon-Bido and Collins 2020), which is an extension of the algorithm created by Collins and Frydenlund (2018). The glove game, a standard cooperative game, is used as the model scenario.

The intent of the game is to collection information on the human players behavior and how that compares to the computerized agents behavior. The final coalition structure of the game is compared to an ideal output (the core of the games).

Change and Senescence

André Martins | Published Tue Nov 10 20:28:59 2020

Agers and non-agers agent compete over a spatial landscape. When two agents occupy the same grid, who will survive is decided by a random draw where chances of survival are proportional to fitness. Agents have offspring each time step who are born at a distance b from the parent agent and the offpring inherits their genetic fitness plus a random term. Genetic fitness decreases with time, representing environmental change but effective non-inheritable fitness can increase as animals learn and get bigger.

A minimal genetic algorithm was preliminarily developed to search for the solution of an elementary arithmetic problem. It has been modified to explore the effect of a mutator gene and the consequent entrance into a hypermutation state. The phenomenon is particularly important in some types of tumorigenesis and in a more general way, in cells and tissues submitted to chronic sublethal environmental or genomic stress.
Since a long time, some scholars suppose that organisms speed up their own evolution by varying mutation rate, but evolutionary biologists are not convinced that evolution can select a mechanism promoting more (often harmful) mutations looking forward an environmental challenge. The aim of the model is to shed light on these controversial points of views.

The O.R.E. (Opinions on Risky Events) model describes how a population of interacting individuals process information about a risk of natural catastrophe. The institutional information gives the official evaluation of the risk; the agents receive this communication, process it and also speak to each other processing further the information. The description of the algorithm (as it appears also in the paper) can be found in the attached file OREmodel_description.pdf.
The code (ORE_model.c), written in C, is commented. Also the datasets (inputFACEBOOK.txt and inputEMAILs.txt) of the real networks utilized with this model are available.

For any questions/requests, please write me at [email protected]

Peer reviewed MGA - Minimal Genetic Algorithm

Cosimo Leuci | Published Tue Sep 3 07:52:29 2019 | Last modified Thu Jan 30 08:42:08 2020

Genetic algorithms try to solve a computational problem following some principles of organic evolution. This model has educational purposes; it can give us an answer to the simple arithmetic problem on how to find the highest natural number composed by a given number of digits. We approach the task using a genetic algorithm, where the candidate solutions to the problem are represented by agents, that in logo programming environment are usually known as “turtles”.

Peer reviewed Population Genetics

Kristin Crouse | Published Thu Feb 8 22:07:51 2018 | Last modified Wed Sep 9 03:31:32 2020

This model simulates the mechanisms of evolution, or how allele frequencies change in a population over time.

The community consequences of intra-specific trait variation (ITV) are a current topic in ecological research. The effects of ITV on species coexistence have, yet, not sufficiently been understood. With this individual-based model we analyzed the effect of intra-specific variation in movement by mimicking variation found in ground-dwelling rodents and analyzing how such variation affects inter-specific differences in competitive ability (i.e. foraging efficiency) and temporary coexistence. The movement algorithm and behavioral plasticity was adapted from existing algorithms and current ecological literature. As a measure for temporary coexistence, we analyzed the time until one of the species went extinct.

Cultural Spread

Salvador Pardo-Gordó Salvador Pardo Gordó | Published Thu Apr 2 11:44:34 2015 | Last modified Thu Apr 23 11:41:45 2020

The purpose of the model is to simulate the cultural hitchhiking hypothesis to explore how neutral cultural traits linked with advantageous traits spread together over time

Dynamic Interbank Network Simulator

Valentina Guleva | Published Wed Nov 23 16:05:19 2016 | Last modified Mon Apr 13 04:05:36 2020

The model provides instruments for the simulation of interbank network evolution. There are tools for dynamic network analysis, allowing to evaluate graph topological invariants, thermodynamic network features and combinational node-based features.

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