Computational Model Library

Our mission is to help computational modelers develop, document, and share their computational models in accordance with community standards and good open science and software engineering practices. Model authors can publish their model source code in the Computational Model Library with narrative documentation as well as metadata that supports open science and emerging norms that facilitate software citation, computational reproducibility / frictionless reuse, and interoperability. Model authors can also request private peer review of their computational models. Models that pass peer review receive a DOI once published.

All users of models published in the library must cite model authors when they use and benefit from their code.

Please check out our model publishing tutorial and feel free to contact us if you have any questions or concerns about publishing your model(s) in the Computational Model Library.

Displaying 10 of 205 results for "Nuno R Barros De Oliveira" clear search

Patch choice model from Optimal Foraging Theory (Human Behavioral Ecology)

C Michael Barton | Published Saturday, November 22, 2008 | Last modified Saturday, April 27, 2013

NetLogo model of patch choice model from optimal foraging theory (human behavioral ecology).

Diet breadth model from Optimal Foraging Theory (Human Behavioral Ecology)

C Michael Barton | Published Wednesday, November 26, 2008 | Last modified Thursday, March 12, 2015

Diet breadth is a classic optimal foraging theory (OFT) model from human behavioral ecology (HBE). Different resources, ranked according to their food value and processing costs, are distributed in th

Hominin ecodynamics v.2

C Michael Barton | Published Monday, September 19, 2011 | Last modified Friday, March 28, 2014

Simulates biobehavioral interactions between 2 populations of hominins.

Peer reviewed Hominin ecodynamics v.1

C Michael Barton | Published Saturday, October 01, 2011 | Last modified Friday, March 28, 2014

Biobehavioral interactions between two populations under different movement strategies.

Hominin Ecodynamics v.1.1 (update for perception and interaction)

C Michael Barton | Published Wednesday, August 15, 2012 | Last modified Saturday, April 27, 2013

Models land-use, perception, and biocultural interactions between two forager populations.

Peer reviewed Swidden Farming Version 2.0

C Michael Barton | Published Wednesday, June 12, 2013 | Last modified Wednesday, September 03, 2014

Model of shifting cultivation. All parameters can be controlled by the user or the model can be run in adaptive mode, in which agents innovate and select parameters.

patch_choice_enhanced.nlogox is an agent-based model (ABM) implementing the patch choice model from optimal foraging theory (OFT) in a multi-agent simulation environment. It extends the classical single-forager, equation-based Marginal Value Theorem (MVT) formulation to support multiple competing foragers, demographic processes, bounded memory, and stochastic resource dynamics on a spatially heterogeneous landscape.

Viking Sailing is a spatially explicit agent-based simulation for conditional exploration of how rasterized coastlines, wind, and
surface-current conditions interact with simplified ship movement, sailing, rowing, navigation, and land-avoidance rules. The
model compares simulated route trajectories and terminal outcomes for hypothetical Viking-era small-ship voyages. It includes an example dataset representing sea surface winds and currents from June 1000 CE. Additional data can are downloaded from Zenodo: https://zenodo.org/records/23213147.

Peer reviewed Gradient Descent Simulation

Ilyes Azouani | Published Wednesday, March 18, 2026 | Last modified Monday, May 25, 2026

This model visualizes gradient descent optimization - the fundamental algorithm used to train neural networks and other machine learning models. Agents represent different optimization algorithms searching for the minimum of a loss landscape (the “error surface” that ML models try to minimize during training).

The model demonstrates how different optimizer types (SGD, Momentum with different parameters) behave on various loss landscapes, from simple bowls to the notoriously difficult Rosenbrock “banana valley” function. This helps build intuition about why certain optimization algorithms work better than others for different problem geometries.

HOW IT WORKS

…

Peer reviewed Routes & Rumours 0.1.1

Martin Hinsch Jakub Bijak Oliver Reinhardt | Published Tuesday, July 12, 2022

Routes & Rumours is an agent-based model of (forced) human migration. We model the formation of migration routes under the assumption that migrants have limited geographical knowledge concerning the transit area and rely to a large degree on information obtained from other migrants.

Displaying 10 of 205 results for "Nuno R Barros De Oliveira" clear search

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