Computational Model Library

00b SimEvo_V5.08 NetLogo

Garvin Boyle | Published Sat Oct 5 08:29:38 2019

In 1985 Dr Michael Palmiter, a high school teacher, first built a very innovative agent-based model called “Simulated Evolution” which he used for teaching the dynamics of evolution. In his model, students can see the visual effects of evolution as it proceeds right in front of their eyes. Using his schema, small linear changes in the agent’s genotype have an exponential effect on the agent’s phenotype. Natural selection therefore happens quickly and effectively. I have used his approach to managing the evolution of competing agents in a variety of models that I have used to study the fundamental dynamics of sustainable economic systems. For example, here is a brief list of some of my models that use “Palmiter Genes”:
- ModEco - Palmiter genes are used to encode negotiation strategies for setting prices;
- PSoup - Palmiter genes are used to control both motion and metabolic evolution;
- TpLab - Palmiter genes are used to study the evolution of belief systems;
- EffLab - Palmiter genes are used to study Jevon’s Paradox, EROI and other things.

Agent-Based Computational Model of the cryptocurrency Bitcoin with a realistic market and transaction system. Bitcoin’s transaction limit (i.e. block size) and Bitcoin generation can be calibrated and optimized for wealth and network’s hashing power by the Non-Dominated Sorted Genetic Algorithm - II.

A test-bed ecological model

Bruce Edmonds | Published Sun May 4 13:22:47 2014 | Last modified Wed May 15 14:18:58 2019

This is a multi-patch meta-population ecological model. It intended as a test-bed in which to test the impact of humans with different kinds of social structure.

Peer reviewed lgm_ecodynamics

Colin Wren | Published Mon Apr 22 20:46:09 2019

This is a modification of a model published previous by Barton and Riel-Salvatore (2012). In this model, we simulate six regional populations within Last Glacial Maximum western Europe. Agents interact through reproduction and genetic markers attached to each of six regions mix through subsequent generations as a way to track population dynamics, mobility, and gene flow. In addition, the landscape is heterogeneous and affects agent mobility and, under certain scenarios, their odds of survival.

This Repast Simphony model simulates genomic admixture during the farming expansion of human groups from mainland Asia into the Papuan dominated islands of Southeast Asia during the Neolithic period.

Peer reviewed Swidden Farming Version 2.0

C Michael Barton | Published Wed Jun 12 23:54:35 2013 | Last modified Wed Sep 3 23:37:34 2014

Model of shifting cultivation. All parameters can be controlled by the user or the model can be run in adaptive mode, in which agents innovate and select parameters.

Hominin Ecodynamics v.1.1 (update for perception and interaction)

C Michael Barton | Published Wed Aug 15 23:17:18 2012 | Last modified Sat Apr 27 20:18:34 2013

Models land-use, perception, and biocultural interactions between two forager populations.

SimAdapt

François Rebaudo | Published Wed Aug 29 12:57:32 2012 | Last modified Mon Oct 13 08:58:37 2014

SimAdapt: An individual-based genetic model for simulating landscape management impacts on populations

00 PSoup V1.22 – Primordial Soup

Garvin Boyle | Published Thu Apr 13 21:03:10 2017

PSoup is an educational program in which evolution is demonstrated, on the desk-top, as you watch. Blind bugs evolve sophisticated heuristic search algorithms to be the best at finding food fast.

Peninsula_Iberica 1.0

Carolina Cucart-Mora Sergi Lozano Javier Fernández-López De Pablo | Published Fri Nov 4 10:14:33 2016 | Last modified Mon Nov 27 09:36:32 2017

This model was build to explore the bio-cultural interaction between AMH and Neanderthals during the Middle to Upper Paleolithic Transition in the Iberian Peninsula

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