Computational Model Library

Our mission is to help computational modelers develop, document, and share their computational models in accordance with community standards and good open science and software engineering practices. Model authors can publish their model source code in the Computational Model Library with narrative documentation as well as metadata that supports open science and emerging norms that facilitate software citation, computational reproducibility / frictionless reuse, and interoperability. Model authors can also request private peer review of their computational models. Models that pass peer review receive a DOI once published.

All users of models published in the library must cite model authors when they use and benefit from their code.

Please check out our model publishing tutorial and feel free to contact us if you have any questions or concerns about publishing your model(s) in the Computational Model Library.

Displaying 10 of 1186 results for "J A Cuesta" clear search

A model to investigate the Evolution of Conditional Cooperation in a Spatial Public Goods Game. We consider two conditional cooperation strategies: one based on thresholds (Battu & Srinivasan, 2020) and another based on independent decisions for each number of cooperating neighbors. We examine the effects of productivity and conditional cooperation criteria on the trajectory of cooperation. Cooperation is evolving with no need for additional mechanisms apart from spatial structure when agents follow conditional strategies. We confirm the positive influence of productivity and cluster formation on the evolution of cooperation in spatial models. Results are robust for the two types of conditional cooperation strategies.

The wisdom of the crowd refers to the phenomenon in which a group of individuals, each making independent decisions, can collectively arrive at highly accurate solutions—often more accurate than any individual within the group. This principle relies heavily on independence: if individual opinions are unbiased and uncorrelated, their errors tend to cancel out when averaged, reducing overall bias. However, in real-world social networks, individuals are often influenced by their neighbors, introducing correlations between decisions. Such social influence can amplify biases, disrupting the benefits of independent voting. This trade-off between independence and interdependence has striking parallels to ensemble learning methods in machine learning. Bagging (bootstrap aggregating) improves classification performance by combining independently trained weak learners, reducing bias. Boosting, on the other hand, explicitly introduces sequential dependence among learners, where each learner focuses on correcting the errors of its predecessors. This process can reinforce biases present in the data even if it reduces variance. Here, we introduce a new meta-algorithm, casting, which captures this biological and computational trade-off. Casting forms partially connected groups (“castes”) of weak learners that are internally linked through boosting, while the castes themselves remain independent and are aggregated using bagging. This creates a continuum between full independence (i.e., bagging) and full dependence (i.e., boosting). This method allows for the testing of model capabilities across values of the hyperparameter which controls connectedness. We specifically investigate classification tasks, but the method can be used for regression tasks as well. Ultimately, casting can provide insights for how real systems contend with classification problems.

This paper develops a spatial agent-based model to examine how fertility regime shifts reshape population concentration and wealth distribution in an abstract urban system. Migration decisions combine population preference, cultural homophily, expected net income, and resource endowment through a standardised softmax utility. The design is deliberately stylised: it is not calibrated to a particular country or city system, but is intended to isolate the feedbacks linking migration, fertility, urban scaling, and accumulated wealth.
The simulations reveal robust directional asymmetry. When fertility shifts from low to high, population concentration responds rapidly; when fertility shifts from high to low, concentration declines only after a detectable delay and may temporarily continue in the previous direction. Wealth adds a second layer of hysteresis: cell total-wealth concentration follows population concentration with delay, cell mean-wealth inequality and system-level wealth indicators are slower still, and phase-space trajectories form loops rather than collapsing onto a single population–wealth curve. Robustness experiments indicate that longer fertility cycles, wider mobility neighbourhoods, and smoother resource landscapes change the magnitude of delay and overshoot, but do not remove the qualitative asymmetry. The paper argues that demographic decline should be understood not as the mirror image of demographic expansion, but as a path-dependent transition mediated by fast migration-income feedbacks and slower fertility, cohort, culture, and wealth mechanisms.

Anthill: A harvester ant colony built from the published science

Adrian Diez Cuadrado | Published Thursday, September 17, 2026 | Last modified Thursday, September 24, 2026

An agent-based model of one colony of the Florida harvester ant, Pogonomyrmex badius, from the day a mated queen lands to the death of the colony. It runs in a web browser and, unchanged, headless in Node for replicate studies.

What the ants do: a claustral queen digs her own shaft and raises the first workers on her reserves; workers dig the nest under local rules, with no ant holding a plan; a one-way, age-based division of labour set by the season of birth, which no shortage reverses; trunk-trail foraging with site fidelity and recruitment; seed storage, opening and germination in the chambers, which is what feeds the larvae; daily weather from the climate normals of the study site, with drought years; nuptial flights after heavy rain; corpse removal; alarm at a disturbance on the foraging ground; and annual nest relocation, in which the store and then the brood are carried along the trail to a new nest the colony digs.

Every value in the model is tagged as measured in this species, borrowed from another ant, or invented, with its source, in a single parameter file. The model is deterministic: one seeded stream per system and a fixed one-minute timestep, so a seed reproduces a run bit for bit in the browser and in Node, which a test pins. A study writes a methods report listing the invented values the results rest on and the acceptance tests the model fails.

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Musical Chairs

Andreas Angourakis | Published Wednesday, February 03, 2016 | Last modified Friday, March 11, 2016

This Agent-Based model intends to explore the conditions for the emergence and change of land use patterns in Central Asian oases and similar contexts.

We compare three model estimates for the time and treatment requirements to eliminate HCV among HIV-positive MSM in Victoria, Australia: a compartmental model; an ABM parametrized by surveillance data; and an ABM with a more heterogeneous population.

The Mobility Transition Model (MoTMo) is a large scale agent-based model to simulate the private mobility demand in Germany until 2035. Here, we publish a very much reduced version of this model (R-MoTMo) which is designed to demonstrate the basic modelling ideas; the aim is by abstracting from the (empirical, technological, geographical, etc.) details to examine the feed-backs of individual decisions on the socio-technical system.

In Western countries, the distribution of relative incomes within marriages tends to be skewed in a remarkable way. Husbands usually do not only earn more than their female partners, but there also is a striking discontinuity in their relative contributions to the household income at the 50/50 point: many wives contribute just a bit less than or as much as their husbands, but few contribute more. Our model makes it possible to study a social mechanism that might create this ‘cliff’: women and men differ in their incomes (even outside marriage) and this may differentially affect their abilities to find similar- or higher-income partners. This may ultimately contribute to inequalities within the households that form. The model and associated files make it possible to assess the merit of this mechanism in 27 European countries.

The model simulates the decisions of residents and a water authority to respond to socio-hydrological hazards. Residents from neighborhoods are located in a landscape with topographic complexity and two problems: water scarcity in the peripheral neighborhoods at high altitude and high risk of flooding in the lowlands, at the core of the city. The role of the water authority is to decide where investments in infrastructure should be allocated to reduce the risk to water scarcity and flooding events in the city, and these decisions are made via a multi-objective site selection procedure. This procedure accounts for the interdependencies and feedback between the urban landscape and a policy scenario that defines the importance, or priorities, that the authority places on four criteria.
Neighborhoods respond to the water authority decisions by protesting against the lack of investment and the level of exposure to water scarcity and flooding. Protests thus simulate a form of feedback between local-level outcomes (flooding and water scarcity) and higher-level decision-making. Neighborhoods at high altitude are more likely to be exposed to water scarcity and lack infrastructure, whereas neighborhoods in the lowlands tend to suffer from recurrent flooding. The frequency of flooding is also a function of spatially uniform rainfall events. Likewise, neighborhoods at the periphery of the urban landscape lack infrastructure and suffer from chronic risk of water scarcity.
The model simulates the coupling between the decision-making processes of institutional actors, socio-political processes and infrastructure-related hazards. In the documentation, we describe details of the implementation in NetLogo, the description of the procedures, scheduling, and the initial conditions of the landscape and the neighborhoods.
This work was supported by the National Science Foundation under Grant No. 1414052, CNH: The Dynamics of Multi-Scalar Adaptation in Megacities (PI Hallie Eakin).

This model represents technological and ecological behaviors of mobile hunter-gatherers, in a variable environment, as they produce, use, and discard chipped stone artifacts. The results can be analyzed and compared with archaeological sites.

Displaying 10 of 1186 results for "J A Cuesta" clear search

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