PhD student at University of Toronto: memes, social networks, contagion, agent based modeling, synthetic populations

As of my incorporation into the Department of Computer Architecture and Operating Systems of the UAB as a postgraduate student, it is possible to divide my scientific-technical career into the following stages:

Simulation of Parallel Applications (1992-99): Focused on the design and development of simulators of parallel applications. This research main objective was the definition of abstractions for parallel programs, based on characterizing tasks and their dependences. Two main abstractions were developed, at first a simpler one, which was easier to parametrize, and, next, a more complex an accurate one. Using these characterizations, several simulation tools were programmed and used in the context of national and European projects. As part of my Master’s thesis, I was involved in the design and development of some of these simulation applications.

National projects: 4, European: 2

International conferences: 3, National: 1, Journal papers: 3

Security in Distributed Systems (2007-12): Focused on the design and development of the FPVA (First Principles Vulnerability Assessment) methodology for the evaluation of vulnerabilities in Grid applications. This methodology clearly defined a set of steps for the assessment of Grid applications vulnerabilities, most of these steps could be automatized or at least supported by specific tools. Jointly with other professors of our group and from the University of Wisconsin, I was involved in the original definition and application of this methodology.

International projects: 2

Master Thesis: 1, Ph.D. Thesis: 1

International conferences: 2, National: 1, Journal papers: 2

Parallel Application Modeling (1999-present): This is my main line of research, aimed at defining high-level performance models for parallel applications. Initially, models were defined for MPI applications with a master-worker and pipeline structure, but later this line has been expanded with the definition of models for memory-intensive OpenMP applications, composed (mix of several structures) applications, applications based on mathematical libraries, distributed data-intensive applications and, finally, applications based on the simulation of agents (ABS) with SPMD structure.

As a result of the work on modeling the performance of ABS parallel systems, we have opened a new line for the definition and implementation of a benchmark for assessing the performance of the parallel simulators generated by well-known platforms, such as FLAME, Repast-HPC or D-Mason. In addition, the knowledge we have gained on this topic has opened new ways of collaboration for optimizing real parallel ABS in the health sciences area (tumor growth and infection spread).

National projects: 12, European: 1

International conferences: 17, National: 4, Journal papers: 11

International Presentations: 4

Parallel Applications Tuning Tools (2010-present): Focused on the design and development of tools for automatic tuning and, in some cases, also dynamic tuning of parallel applications. These tools allow the integration of performance models in the form of external components provided by the analyst. For this reason, this research line is tightly coupled with the Parallel Application Modeling one. The two main tools developed totally or partially by our group are Monitoring Analysis and Tuning Environment-MATE (and its highly scalable evolution ELASTIC) and Periscope Tuning Framework-PTF.

National projects: 2, European: 1

International conferences: 11, Journal papers: 2

Tools: MATE, ELASTIC, PTF

International Presentations: 5

Scott Heckbert (PhD 2010) is the Principal Environmental Scientist at the Alberta Energy Regulator, and an Adjunct Professor at University of Alberta and University of Lethbridge, Canada. Scott’s area of specialization is combining agent-based models, GIS, and 3D visualization. These technologies are used as digital laboratories where scientists, decision makers, and stakeholders can interact for improved understanding of complex social-environmental systems.

After completing my undergraduate education at Bilkent University (Turkey), I continued my studies at the University of Cambridge, receiving first my MPhil and then my PhD in Assyriology/Ancient Near Eastern Archaeology, funded by a Chevening Open Society Scholarship and the Board of Higher Education of Turkey. After teaching for several years at Çanakkale Onsekiz Mart University, I moved to eastern Turkey to start the Archaeology Department of Bitlis Eren University, and I was the Head of Department until the end of 2018. I have been a visiting researcher at the American Center of Oriental Research in Amman in 2011 (Mellink Fellowship), at the Oriental Institute of the University of Chicago in 2014 (Fulbright Fellowship), and at the Department of Archaeology and Ancient History of Uppsala University in 2019 (Swedish Institute Fellowship). I have also held a Newton Advanced Fellowship here at Leicester in the UK. I have previously co-directed several fieldwork projects: the Cambridge University Kilise Tepe Excavations (southern Turkey, 2009-13), the Cide Archaeological Project (survey, Black Sea coast, 2010-1), the Sirwan Regional Project (survey, northern Iraq, 2012-5), and the Lower Göksu Archaeological Salvage Survey Project (survey, southern Turkey, 2013-7). I am currently co-directing the Çadır Höyük excavations, which is a joint American, British, Canadian and Turkish archaeological excavation project conducted in north-central Turkey, and the Taşeli-Karaman Archeological Project, which was initiated in 2018 as a continuation of the Lower Göksu Archaeological Salvage Survey Project, to study the Göksu River Basin in its wider geographical context in the hope of better understanding its role as a network hub connecting the eastern Mediterranean world to the central Anatolian Plateau.

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Biographical Sketch

(a) Professional Preparation

Brigham Young University Statistics & Computer Science B.S. 1986
University of North Carolina Chapel Hill Biostatistics M.S. 1988
North Carolina State University Biomathematics & Entomology Ph.D. 1997

(b) Appointments

Associate Professor 2006-current: Brigham Young University Department of Biology
Assistant Professor 2000-2006: Brigham Young University Department of Integrative Biology
Research Scientist 1997-1999: Agriculture Research Service-USDA Pacific Basin Agricultural Research Center.

(c) Publications

i. Five most relevant publications

Ahmadou H. Dicko, Renaud Lancelot, Momar Talla Seck, Laure Guerrini, Baba Sall, Mbargou Low, Marc J.B. Vreysen, Thierry Lefrançois, Fonta Williams, Steven L. Peck, and Jérémy Bouyer. 2014. Using species distribution models to optimize vector control: the tsetse eradication campaign in Senegal. Proceedings of the National Academy of Science. 11 (28) : 10149-10154
Peck, S. L. 2014. Perspectives on why digital ecologies matter: Combining population genetics and ecologically informed agent-based models with GIS for managing dipteran livestock pests. Acta Tropica. 138S (2014) S22–S25
Peck, S. L. and Jérémy Bouyer. 2012. Mathematical modeling, spatial complexity, and critical decisions in tsetse control. Journal of Economic Entomology 105(5): 1477—1486.
Peck, S. L. 2012. Networks of habitat patches in tsetse fly control: implications of metapopulation structure on assessing local extinction probabilities. Ecological Modelling 246: 99–102.
Peck, S. L. 2012. Agent-based models as fictive instantiations of ecological processes.” Philosophy & Theory in Biology. Vol. 4.e303 (2012): 12

ii. Five other publications of note

Peck, S. L. 2008. The Hermeneutics of Ecological Simulation. Biology and Philosophy 23:383-402.
K.M. Froerer, S.L. Peck, G.T. McQuate, R.I. Vargas, E.B. Jang, and D.O. McInnis. 2010. Long distance movement of Bactrocera dorsalis (Diptera: Tephritidae) in Puna, Hawaii: How far can they go? American Entomologist 56(2): 88-94
Peck, S. L. 2004. Simulation as experiment: a philosophical reassessment for biological modeling. Trends in Ecology and Evolution 19 (10): 530 534
Storer N.P., S. L. Peck, F. Gould, J. W. Van Duyn and G. G. Kennedy. 2003 Sensitivity analysis of a spatially-explicit stochastic simulation model of the evolution of resistance in Helicoverpa zea (Lepidoptera: Noctuidae) to Bt transgenic corn and cotton. Economic Entomology. 96(1): 173-187
Peck, S. L., F. Gould, and S. Ellner. 1999. The spread of resistance in spatially extended systems of transgenic cotton: Implications for the management of Heliothis virescens (Lepidoptera: Noctuidae). Economic Entomology 92:1-16.