Computational Model Library

Our mission is to help computational modelers develop, document, and share their computational models in accordance with community standards and good open science and software engineering practices. Model authors can publish their model source code in the Computational Model Library with narrative documentation as well as metadata that supports open science and emerging norms that facilitate software citation, computational reproducibility / frictionless reuse, and interoperability. Model authors can also request private peer review of their computational models. Models that pass peer review receive a DOI once published.

All users of models published in the library must cite model authors when they use and benefit from their code.

Please check out our model publishing tutorial and feel free to contact us if you have any questions or concerns about publishing your model(s) in the Computational Model Library.

Displaying 10 of 166 results for "Patricia Fanning" clear search

The SAFIRe model (Simulation of Agents for Fertility, Integrated Energy, Food Security, and Reforestation) is an agent-based model co-developed with rural communities in Senegal’s Groundnut Basin. Its purpose is to explore how local farming and pastoral practices affect the regeneration of Faidherbia albida trees, which are essential for maintaining soil fertility and supporting food security through improved millet production. The model supports collective reflection on how different social and ecological factors interact, particularly around firewood demand, livestock pressure, and agricultural intensification.

The model simulates a 100-hectare agricultural landscape where agents (farmers, shepherds, woodcutters, and supervisors) interact with trees, land parcels, and each other. It incorporates seasonality, crop rotation, tree growth and cutting, livestock feeding behaviors, and farmers’ engagement in sapling protection through Assisted Natural Regeneration (ANR). Two types of surveillance strategies are compared: community-led monitoring and delegated surveillance by forestry authorities. Farmer engagement evolves over time based on peer influence, meeting participation, and the success of visible tree regeneration efforts.

SAFIRe integrates participatory modeling (ComMod and ComExp) and a backcasting approach (ACARDI) to co-produce scenarios rooted in local aspirations. It was explored using the OpenMole platform, allowing stakeholders to test a wide range of future trajectories and analyze the sensitivity of key parameters (e.g., discussion frequency, time in fields). The model’s outcomes not only revealed unexpected insights—such as the hidden role of farmers in tree loss—but also led to real-world actions, including community nursery creation and behavioral shifts toward tree care. SAFIRe illustrates how agent-based modeling can become a tool for social learning and collective action in socio-ecological systems.

An agent-based model in which fourteen European Union member states each carry a cooperation
propensity in [0,1], updated by a logistic link applied to a latent index that combines the unit’s
own previous state, a weighted average of the other units’ states, and four min-max normalised
exogenous indicators (cooperative benefit, opportunistic temptation, systemic exit cost,
intertemporal confidence). The logistic centres are anchored so that the observed 2024
configuration is an exact fixed point of the baseline map, the device that makes such models
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Human mate choice is a complex system

Paul Smaldino Jeffrey C Schank | Published Friday, February 08, 2013 | Last modified Saturday, April 27, 2013

A general model of human mate choice in which agents are localized in space, interact with close neighbors, and tend to range either near or far. At the individual level, our model uses two oft-used but incompletely understood decision rules: one based on preferences for similar partners, the other for maximally attractive partners.

Agent-based model of risk behavior in adolescence

N Schuhmacher P Van Geert L Ballato | Published Monday, June 24, 2013 | Last modified Monday, April 08, 2019

The computer model simulates the development of a social network (i.e. formation of friendships and cliques), the (dyadic) interactions between pupils and the development of similarities and differences in their behavioral profiles.

Peer reviewed Evolution of Sex

Kristin Crouse | Published Sunday, June 05, 2016 | Last modified Wednesday, February 18, 2026

Evolution of Sex is a NetLogo model that illustrates the advantages and disadvantages of sexual and asexual reproductive strategies. It seeks to demonstrate the answer to the question “Why do we have sex?”

This model simulates networking mechanisms of an empirical social network. It correlates event determinants with place-based geography and social capital production.

COOPER - Flood impacts over Cooperative Winemaking Systems

David Nortes-Martinez David Nortes Martinez | Published Thursday, February 08, 2018 | Last modified Friday, March 22, 2019

The model simulates flood damages and its propagation through a cooperative, productive, farming system, characterized as a star-type network, where all elements in the system are connected one to each other through a central element.

Substitution of food products will be key to realising widespread adoption of sustainable diets. We present an agent-based model of decision-making and influences on food choice, and apply it to historically observed trends of British whole and skimmed (including semi) milk consumption from 1974 to 2005. We aim to give a plausible representation of milk choice substitution, and test different mechanisms of choice consideration. Agents are consumers that perceive information regarding the two milk choices, and hold values that inform their position on the health and environmental impact of those choices. Habit, social influence and post-decision evaluation are modelled. Representative survey data on human values and long-running public concerns empirically inform the model. An experiment was run to compare two model variants by how they perform in reproducing these trends. This was measured by recording mean weekly milk consumption per person. The variants differed in how agents became disposed to consider alternative milk choices. One followed a threshold approach, the other was probability based. All other model aspects remained unchanged. An optimisation exercise via an evolutionary algorithm was used to calibrate the model variants independently to observed data. Following calibration, uncertainty and global variance-based temporal sensitivity analysis were conducted. Both model variants were able to reproduce the general pattern of historical milk consumption, however, the probability-based approach gave a closer fit to the observed data, but over a wider range of uncertainty. This responds to, and further highlights, the need for research that looks at, and compares, different models of human decision-making in agent-based and simulation models. This study is the first to present an agent-based modelling of food choice substitution in the context of British milk consumption. It can serve as a valuable pre-curser to the modelling of dietary shift and sustainable product substitution to plant-based alternatives in Britain.

NearshoreABM simulates whether a region captures the production linkages that nearshoring makes available, or fails to capture them because physical infrastructure and credit supply bind first.

The model runs over the 32 Mexican states at quarterly frequency. Multinational anchor firms decide whether to enter and where to locate, following Melitz selection on heterogeneous productivity under trade-policy uncertainty. Domestic supplier firms decide whether to formalise and whether to invest in quality, and may or may not obtain a contract with an anchor. A banking sector allocates a finite regional credit supply according to observed default risk, serving anchor firms before suppliers.

Electricity and water capacity enter production as non-linear congestion penalties with an engineering-based threshold, so the response of output to demand growth is discontinuous rather than proportional: below the threshold there is no penalty at all, between threshold and capacity the penalty grows quadratically, and above capacity it decays exponentially. Congestion is rivalrous within the quarter, which makes the order of production economically meaningful rather than incidental.

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AnimDens NetLogo

Miguel Pais Christine Ward-Paige | Published Friday, February 10, 2017 | Last modified Sunday, February 23, 2020

The model demonstrates how non-instantaneous sampling techniques produce bias by overestimating the number of counted animals, when they move relative to the person counting them.

Displaying 10 of 166 results for "Patricia Fanning" clear search

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