Computational Model Library

Our mission is to help computational modelers develop, document, and share their computational models in accordance with community standards and good open science and software engineering practices. Model authors can publish their model source code in the Computational Model Library with narrative documentation as well as metadata that supports open science and emerging norms that facilitate software citation, computational reproducibility / frictionless reuse, and interoperability. Model authors can also request private peer review of their computational models. Models that pass peer review receive a DOI once published.

All users of models published in the library must cite model authors when they use and benefit from their code.

Please check out our model publishing tutorial and feel free to contact us if you have any questions or concerns about publishing your model(s) in the Computational Model Library.

Displaying 10 of 266 results for "Yue Dou" clear search

This model simulates the behaviour of the agents in 3 wine markets parallel trading systems: Liv-ex, Auctions and additionally OTC market (finally not used). Behavioural aspects (impatience) is additionally modeled. This is an extention of parallel trading systems model with technical trading (momentum and contrarian) and noise trading.

Agent-based model of sexual partnership

Andrea Knittel | Published Monday, December 05, 2011 | Last modified Saturday, April 27, 2013

In this model agents meet, evaluate one another, decide whether or not to date, if and when to become sexual partners, and when to break up.

ForagerNet3_Demography_V2

Andrew White | Published Thursday, February 13, 2014

ForagerNet3_Demography_V2 is a non-spatial ABM for exploring hunter-gatherer demography. This version (developed from FN3D_V1) contains code for calculating the ratio of old to young adults (the “OY ratio”) in the living and dead populations.

Bayesian Updating Opinion Shared Uncertainty Model.

Johnathan Adams | Published Monday, November 16, 2020 | Last modified Friday, May 14, 2021

This is an opinion dynamics model which extends the model found in (Martins 2009). The previous model had an unshared uncertainty assumption in agent-to-agent interaction this model relaxes that assumption. The model only supports a fully connect network where every agent has an equal likelihood of interacting with every other agent at any given time step. The model is highly modular so different social network paradigm can easier be implemented.

This model allows for analyzing the most efficient levers for enhancing the use of recycled construction materials, and the role of empirically based decision parameters.

Social Innovation Model

Jiin Jung | Published Monday, April 28, 2025

This research aims to uncover the micro-mechanisms that drive the macro-level relationship between cultural tolerance and innovation. We focus on the indirect influence of minorities—specifically, workers with diverse domain expertise—within collaboration networks. We propose that minority influence from individuals with different expertise can serve as a key driver of organizational innovation, particularly in dynamic market environments, and that cultural tolerance is critical for enabling such minority-induced innovation. Our model demonstrates that seemingly conflicting empirical patterns between cultural tightness/looseness and innovation can emerge from the same underlying micro-mechanisms, depending on parameter values. A systematic simulation experiment revealed an optimal cultural configuration: a medium level of tolerance (t = 0.6) combined with low consistency (κ = 0.05) produced the fastest adaptation to abrupt market changes. These findings provide evidence that indirect minority influence is a core micro-mechanism linking cultural tolerance to innovation.

Aquaponics & Multitrophic System Simulation

derrickatasu | Published Friday, September 25, 2026 | Last modified Thursday, October 08, 2026

An agent-based model built in NetLogo that simulates a closed-loop recirculating aquaponics and integrated multitrophic aquaculture (IMTA) ecosystem, modeling the complex dynamics between aquatic species, vermaculture, and hydroponic plant beds. This model captures the operational mechanics of a complex, sustainable production network. It tracks nutrient flows, water recirculation pathways, biological growth stages, and environmental feedback penalties (such as nutrient toxicity or starvation) across multiple specialized tanks and grow beds. Model Architecture & HabitatsAquatic Subsystem: Duckweed Tank, Breeding Tank, Fry Tank, Fingerling Tank, Adult Tank, and a Holding Tank for harvested fish. Benthic & Waste Management: Crawdad Tank 1 & 2 for bottom-feeding and waste processing, alongside a Vermaculture node populated by composting worms. Hydroponic Subsystem: Five sequential Grow Beds and a recirculating loop feeding back into the system. Key Agent DynamicsWater Flow Visualization: Active links between tanks spawn animated droplet agents that visually simulate recirculating water dynamics across the network. Biological Growth & Aging: Fish and plants progress through age-based development thresholds governed by species-specific parameters. Feedback Loops:Toxicity Penalty: Excess nutrients (nutrient-per-day > 80) slow fish growth rates by 50%. Starvation Penalty: Insufficient nutrient levels (nutrient-per-day < 30) delay plant maturation by 50%. Interface Controlsfish-type Chooser: Selects the primary aquatic species (Tilapia, Channel Catfish, Trout, Goldfish), altering base growth thresholds. plant-type Chooser: Selects the cultivated crop (Lettuce, Basil, Tomatoes, Mint). nutrient-per-day Slider: Manages daily nutrient input to balance system load and avoid toxicity or starvation thresholds. Dashboard Plot: Real-time tracking of total-fish-harvested and total-plants-harvested.

Netlogo Aquaponic Simulation

Derrick | Published Tuesday, October 06, 2026 | Last modified Wednesday, October 21, 2026

This agent-based aquaponics simulation models the biological resilience and complex dynamics of a closed-loop agricultural system. Designed for educational use and agricultural research, the model helps aquaponic designers, farmers, and hobbyists understand systemic dynamics and stress-test species configurations prior to a physical build. The simulation dynamically models the nitrogen cycle by tracking aquatic bio-loads, bacterial filtration, and plant nutrient uptake. Utilizing real-world biological metrics from the Loyola Global Aquatic Excrement Dataset, the model calculates species-specific ammonia excretion rates (toxicity) for various aquatic life, including Trout, Tilapia, and Goldfish. Nitrifying bacteria agents convert this toxicity into usable nitrates, which are then absorbed by specific crop agents—such as Tomatoes, Swiss Chard, or Lettuce—at variable rates. Key features include dynamic stochastic harvesting, measurable agent health, vermaculture and crawdad integration, and reactive biological mitigators like emergency duckweed buffering. The system also introduces chaotic environmental variables, allowing users to test the agricultural setup’s resilience against random shocks like bio-filter pump failures and temperature crashes. This model is released under the GNU General Public License v3.0 (GPL-3.0) to encourage collaborative improvement within the academic and farming communities.

Peer reviewed JuSt-Social COVID-19

Jennifer Badham | Published Thursday, June 18, 2020 | Last modified Monday, March 29, 2021

NetLogo model that allows scenarios concerning general social distancing, shielding of high-risk individuals, and informing contacts when symptomatic. Documentation includes a user manual with some simple scenarios, and technical information including descriptions of key procedures and parameter values.

Both models simulate n-person prisoner dilemma in groups (left figure) where agents decide to C/D – using a stochastic threshold algorithm with reinforcement learning components. We model fixed (single group ABM) and dynamic groups (bad-barrels ABM). The purpose of the bad-barrels model is to assess the impact of information during meritocratic matching. In the bad-barrels model, we incorporated a multidimensional structure in which agents are also embedded in a social network (2-person PD). We modeled a random and homophilous network via a random spatial graph algorithm (right figure).

Displaying 10 of 266 results for "Yue Dou" clear search

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