This is a model of plant communities in urban and suburban residential neighborhoods. These plant communities are of interest because they provide many benefits to human residents and also provide habitat for wildlife such as birds and pollinators. The model was designed to explore the social factors that create spatial patterns in biodiversity in yards and gardens. In particular, the model was originally developed to determine whether mimicry behaviors–-or neighbors copying each other’s yard design–-could produce observed spatial patterns in vegetation. Plant nurseries and socio-economic constraints were also added to the model as other potential sources of spatial patterns in plant communities.

The idea for the model was inspired by empirical patterns of spatial autocorrelation that have been observed in yard vegetation in Chicago, Illinois (USA), and other cities, where yards that are closer together are more similar than yards that are farther apart. The idea is further supported by literature that shows that people want their yards to fit into their neighborhood. Currently, the yard attribute of interest is the number of plant species, or species richness. Residents compare the richness of their yards to the richness of their neighbors’ yards. If a resident’s yard is too different from their neighbors, the resident will be unhappy and change their yard to make it more similar.

The model outputs information about the diversity and identity of plant species in each yard. This can be analyzed to look for spatial autocorrelation patterns in yard diversity and to explore relationships between mimicry behaviors, yard diversity, and larger scale diversity.

The code for the paper “Social norms and the dominance of Low-doers”

We use a threshold model to drive our simulated network analysis testing public support for candidates in invisible primaries. We assign voter thresholds for candidates and vary number of voters, attachment to candidates and decay. Results of the algorithm show effects of size of lead, attachment and size of decay.

The Relation-Based Model (RBM) purpose is to operationalise (a form of) process-relational (PR) thinking to serve as a thinking tool for process-relational thinking among social-ecological system (SES) researchers. The development of this model itself has been a ‘Proof of concept’- exercise to see whether we actually represent process-relational thinking in a methodology that is entity-based (ABM).

The target of the agent-based model is to show the emergence, change and disappearance of fishing assemblages (focusing on processes of self-organisation) in a Mexican fishery using a process-relational view. From this view, a fishery is regarded as an assemblage in which fishing can be enabled, fishing can occur, and fish can be bought/sold. These core doings - or sub-assemblages or capacities - maintain the assemblage. Each (sub)assemblage reflects different actualisations of constellations of relations and elements (buyers, fishers, fuel, permits, vessels and wind). The RBM thereby reflects an artificial fishery in which agents (elements) and their links (relations) engage in (enabling) fishing and buying/selling.

Spatial explicit model of a rangeland system, based on Australian conditions, where grass, woody shrubs and fire compete fore resources. Overgrazing can cause the system to flip from a healthy state to an unproductive shrub state. With the model one can explore the consequences of different movement rules of the livestock on the resilience of the system.

The model is discussed in Introduction to Agent-Based Modeling by Marco Janssen. For more information see https://intro2abm.com/.

Pandemic (pip install pandemic)

An agent model in which commuting, compliance, testing and contagion parameters drive infection in a population of thousands of millions. Agents follow Ornstein-Uhlenbeck processes in the plane and collisions drive transmission. Results are stored at SwarmPrediction.com for further analysis, and can be retrieved by anyone.

This is a very simple simulation that in a special case can be shown to be approximated by a compartmental model with time varying infection rate.

A more complete description of the model can be found in Appendix I as an ODD protocol. This model is an expansion of the Hemelrijk (1996) that was expanded to include a simple food seeking behavior.

Butterflies (turtles) goes through metamorphism and moves to corresponding patches each season of the year. The number of years and seasons are monitored.

This is a multi-patch meta-population ecological model. It intended as a test-bed in which to test the impact of humans with different kinds of social structure.

An ABM simulating white-tailed deer population dynamics for selected Michigan counties. The model yields pre-harvest and post-harvest realistic population snapshots that can be used to initialize the surveillance model (MIOvPOPsurveillance) and the CWD transmission dynamics model (MIOvCWD) respectively.