A minimal genetic algorithm was previously developed in order to solve an elementary arithmetic problem. It has been modified to explore the effect of a mutator gene and the consequent entrance into a hypermutation state. The phenomenon seems relevant in some types of tumorigenesis and in a more general way, in cells and tissues submitted to chronic sublethal environmental or genomic stress.
For a long time, some scholars suppose that organisms speed up their own evolution by varying mutation rate, but evolutionary biologists are not convinced that evolution can select a mechanism promoting more (often harmful) mutations looking forward to an environmental challenge.
The model aims to shed light on these controversial points of view and it provides also the features required to check the role of sex and genetic recombination in the mutator genes diffusion.

This model includes an innovation search environment. Agents search and can share their findings. It’s implemented in Netlogo-Hubnet & a parallel Netlogo model. This allows for validation of search strategies against experimental findings.

A draft model with some useful code for creating different network structures using the Netlogo NW extension. This model is used for the following tutorial:
Brughmans, T. (2018). Network structures and assembling code in Netlogo, Tutorial, https://archaeologicalnetworks.wordpress.com/resources/#structures .

Deforestation Simulation Model in NetLogo with GIS Layers

This model has developed in Netlogo software and utilizes
the GIS extension.
This NetLogo-based agent-based model (ABM) simulates deforestation dynamics using the GIS extension. It incorporates parameters like wood extraction, forest regeneration, agricultural expansion, and livestock impact. The model integrates spatial layers, including forest areas, agriculture zones, rural settlements, elevation, slope, and livestock distribution. Outputs include real-time graphical representations of forest loss, regeneration, and land-use changes. This model helps analyze deforestation patterns and conservation strategies using ABM and GIS.

This is a short NetLogo example demonstrating how to initialize 500 agents with 4 correlated parameters each with random values by doing the necessary calculations in the program “R” and retrieving the results.

A draft model teaching how a Roman transport model can be imported into Netlogo, and the issues confronted when importing and reusing open access Roman datasets. This model is used for the tutorial:
Brughmans, T. (2018). Importing a Roman Transport network with Netlogo, Tutorial, https://archaeologicalnetworks.wordpress.com/resources/#transport .

The Garbage Can Model of Organizational Choice is a fundamental model of organizational decision-making originally proposed by J.D. Cohen, J.G. March and J.P. Olsen in 1972. In the 2000s, G. Fioretti and A. Lomi presented a NetLogo agent-based interpretation of this model. This code is the NetLogo 6.1.1 updated version of the Fioretti-Lomi model.

The code and data in this repository are associated with the article titled: “Locating Cultural Holes Brokers in Diffusion Dynamics across Bright Symbolic Boundaries.” The NetLogo code (version 6.4.0) is designed to be a standalone piece of code although it uses the ‘nw’ and ‘matrix’ extensions that come integrated with NetLogo 6.4.0. The code was ran on a Windows 10 x 64 machine.

NetLogo model corresponding to the JASSS article “Agent-Based Simulation of West Asian Urban Dynamics: Impact of Refugees”

This software simulates cars and bicycles as traffic participants while crossing different crossroad designs such as roundabouts, protected crossroads and standard crossroads. It is written in Netlogo 6.2 and aims to identify safety characteristics of these layouts using agent-based modeling. Participants track the line of sight to each other and print them as an output alongside with the adjacent destination, used layout, count of collisions/cars/bicycles and time.

Detailed information can be found within the info tab of the program itself.