Community assembly after intervention by coral transplantation
The potential of transplantation of scleractinian corals in restoring degraded reefs has been widely recognized. Levels of success of coral transplantation have been highly variable due to variable environmental conditions and interactions with other reef organisms. The community structure of the area being restored is an emergent outcome of the interaction of its components as well as of processes at the local level. Understanding the
coral reef as a complex adaptive system is essential in understanding how patterns emerge from processes at local scales. Data from a coral transplantation experiment will be used to develop an individual-based model of coral community development. The objectives of the model are to develop an understanding of assembly rules, predict trajectories and discover unknown properties in the development of coral reef communities in the context of reef restoration. Simulation experiments will be conducted to derive insights on community trajectories under different disturbance regimes as well as initial transplantation configurations. The model may also serve as a decision-support tool for reef restoration.
I am a full stack software engineer who has been building cyberinfrastructure for computational social science at Arizona State University since 2006; projects include the Digital Archaeological Record, the Virtual Commons, the Social Ecological Systems Library, Synthesizing Knowledge of Past Environments (SKOPE), the Port of Mars, and CoMSES Net, where I serve as co-director and technical lead.
I also work to improve the state of open, transparent, reusable, and reproducible computational science as a Carpentries certified instructor and maintainer for the Python Novice Gapminder lesson, and member of the Force 11 Software Citation Implementation Working Group and Consortium of Scientific Software Registries and Repositories.
My research interests include collective action, social ecological systems, large-scale software systems engineering, model componentization and coupling, and finding effective ways to promote and facilitate good software engineering practices for reusable, reproducible, and interoperable scientific computation.
Bashar Ourabi is a principle consultant at arabianconsult of Syria where he has been chairman since 2003. He holds Bsc. Eng., A Grad. Certificate in Project engineering from the University of Central Florida; and a MS. in Public Administration from the Doha Graduate Institute in Qatar.
Bashar completed his graduate studies at Doha Institute for Graduate Studies and his undergraduate studies at the Unversity of Central Florida. His research interests lie in the area of systems modelling, ranging from theory to design to implementation. He has collaborated actively with researchers in several other disciplines of computer science, system design, and bigData Artificial Intellegence, particularly BigData Expert System and Automated decision Making.
He has served on many international posts overlooking public infrastructure design and operations, varying from public transport, urban design and operations management. These posts spanned over the the US and the Middle East including Florida, UAE and Qatar.
Bashar has served on many conferences and workshop program committees and has succesfully delivered many corporate training programs..
Web Based Decision Making and Expert Systems
Discret Event Simulation
Corporate Support Systems
Mazaher Kianpour is a PhD candidate at NTNU. He holds a Bachelor’s degree in Computer Engineering (Software) from the Payame Noor University. He obtained his Master’s degree in Architecture of Computer Systems from Shahid Beheshti University, Tehran, Iran. He started his PhD in Information Security at NTNU in May 2018. His PhD research lies at the intersection of economics and information security with a socio-technical perspective. He has several years of work experience at Tehran University of Medical Sciences, and his professional training includes Computer Networks, Cybersecurity and Risk Management.
My main research interest is modelling of information security, business operations and deterrents in complex ICT ecosystem. I will in particular focus on the complex interaction between various stakeholders and actors in the information security business domain. In order to model and better understand the information security ecosystem, I rely on agent-based simulation and quantitative modelling techniques such as stochastic modelling, discrete event simulations and game theory. Of particular interest is to gain increased understanding on how various security threats and measures influence business operations in the digital ecosystem.
I am a PhD Candidate in the Biological Anthropology program at the University of Minnesota. My research involves using agent-based models combined with field research to test a broad range of hypotheses in biology. I have created a model, B3GET, which simulates the evolution of virtual organisms to better understand the relationships between growth and development, life history and reproductive strategies, mating strategies, foraging strategies, and how ecological factors drive these relationships. I also conduct field research to better model the behavior of these virtual organisms. Here I am pictured with an adult male gelada in Ethiopia!
I specialize in writing agent-based models for both research in and the teaching of subjects including: biology, genetics, evolution, demography, and behavior.
For my dissertation research, I have developed “B3GET,” an agent-based model which simulates populations of virtual organisms evolving over generations, whose evolutionary outcomes reflect the selection pressures of their environment. The model simulates several factors considered important in biology, including life history trade-offs, investment in body size, variation in aggression, sperm competition, infanticide, and competition over access to food and mates. B3GET calculates each agent’s ‘decision-vectors’ from its diploid chromosomes and current environmental context. These decision-vectors dictate movement, body growth, desire to mate and eat, and other agent actions. Chromosomes are modified during recombination and mutation, resulting in behavioral strategies that evolve over generations. Rather than impose model parameters based on a priori assumptions, I have used an experimental evolution procedure to evolve traits that enabled populations to persist. Seeding a succession of populations with the longest surviving genotype from each run resulted in the evolution of populations that persisted indefinitely. I designed B3GET for my dissertation, but it has an indefinite number of applications for other projects in biology. B3GET helps answer fundamental questions in evolutionary biology by offering users a virtual field site to precisely track the evolution of organismal populations. Researchers can use B3GET to: (1) investigate how populations vary in response to ecological pressures; (2) trace evolutionary histories over indefinite time scales and generations; (3) track an individual for every moment of their life from conception to post-mortem decay; and (4) create virtual analogues of living species, including primates like baboons and chimpanzees, to answer species-specific questions. Users are able to save, edit, and import population and genotype files, offering an array of possibilities for creating controlled biological experiments.
Volker Grimm currently works at the Department of Ecological Modelling, Helmholtz-Zentrum für Umweltforschung. Volker does research in ecology and biodiversity research.
How to model it: Ecological models, in particular simulation models, often seem to be formulated ad hoc and only poorly analysed. I am therefore interested in strategies and methods for making ecological modelling more coherent and efficient. The ultimate aim is to develop preditive models that provide mechanstic understanding of ecological systems and that are transparent and structurally realistic enough to support environmental decision making.
Pattern-oriented modelling: This is a general strategy of using multiple patterns observed in real systems as multiple criteria for chosing model structure, selecting among alternative submodels, and inversely determining entire sets of unknown model parameters.
Individual-based and agent-based modelling: For many, if not most, ecological questions individual-level aspects can be decisive for explaining system-level behavior. IBM/ABMs allow to represent individual heterogeneity, local interactions, and/or adaptive behaviour
Ecological theory and concepts: I am particularly interested in exploring stability properties like resilience and persistence.
Modelling for ecological applications: Pattern-oriented modelling allows to develop structurally realistic models, which can be used to support decision making and the management of biodiversity and natural resources. Currently, I am involved in the EU project CREAM, where a suite of population models is developed for pesticide risk assessment.
Standards for model communication and formulation: In 2006, we published a general protocol for describing individual- and agent-based models, called the ODD protocol (Overview, Design concepts, details). ODD turned out to be more useful (and needed) than we expected.
I am Professor in Computational Resilience Economics at the University of Twente (the Netherlands), which I joined in 2010. In September 2017 I also joined University of Technology Sydney (Australia) as Professor of Computational Economic Modeling working with spatial simulation models to study socioeconomic impacts of disasters and emergence of resilience across scales. I was honored to be elected as a Member of the De Jonge Akademie of the Royal Dutch Academy of Sciences (DJA/ KNAW in 2016) and of Social Sciences Council (SWR/KNAW in 2017). From 2009 to 2015 I have been working part-time as an economist at Deltares – the leading Dutch knowledge institute in the field of water management – specializing in economics of climate change, with focus on floods and droughts management.
I am interested in the feedbacks between policies and aggregated outcomes of individual decisions in the context of spatial and environmental policy-making. The issue of social interactions and information diffusion through networks to affect economic behavior is highly relevant here. My research line focuses on exploring how behavioral changes at micro level may lead to critical transitions (tipping points/regime shifts) on macro level in complex adaptive human-environment systems in application to climate change economics. I use agent-based modelling (ABM) combined with social science methods of behavioral data collection on individual decisions and social networks. This research line has been distinguished by the NWO VENI and ERC Starting grants and the Early Career Excellence award of the International Environmental Modeling Society (iEMSs). In 2018 I was invited to serve as the Associate Editor of the Environmental Modelling & Software journal, where I have been a regular Member of the Editorial Board since 2013.
Dr. William G. Kennedy, “Bill,” is continuing to learn in a third career, this time as an academic, a computational social scientist.
His first a career was in military service as a Naval Officer, starting with the Naval Academy, Naval PostGraduate School (as the first computer science student from the Naval Academy), and serving during the Cold War as part of the successful submarine-based nuclear deterrent. After six years of active duty service, he served over two decades in the Naval Reserves commanding three submarine and submarine-related reserve units and retiring after 30 years as a Navy Captain with several personal honors and awards.
His second career was in civilian public service: 10 years at the Nuclear Regulatory Commission and 15 years with the Department of Energy. At the NRC he rose to be an advisor to the Executive Director for Operations and the authority on issues concerning the reliance on human operators for reactor safety, participating in two fly-away accident response teams. He left the NRC for a promotion and to lead, as technical director, the entrepreneurial effort to explore the use of light-water and accelerator technologies for the production of nuclear weapons materials. That work led to him becoming the senior policy officer responsible for strategic planning and Departmental performance commitments, leading development of the first several DOE strategic plans and formal performance agreements between the Secretary of Energy and the President.
Upon completion of doctoral research in Artificial Intelligence outside of his DOE work, he began his third career as a scientist. That started with a fully funded, three-year post-doctoral research position in cognitive robotics at the Naval Research Laboratory sponsored by the National Academy of Science and expanding his AI background with research in experimental Cognitive Science. Upon completion, he joined the Center for Social Complexity, part of the Krasnow Institute for Advanced Study at George Mason University in 2008 where he is now the Senior Scientific Advisor. His research interests range from cognition at the individual level to models of millions of agents representing individual people. He is currently leading a multi-year project to characterize the reaction of the population of a mega-city to a nuclear WMD (weapon of mass destruction) event.
Dr. Kennedy holds a B.S. in mathematics from the U.S. Naval Academy, and Master of Science in Computer Science from the Naval PostGraduate School, and a Ph.D. in Information Technology from George Mason University and has a current security clearance. Dr. Kennedy is a member of Sigma Xi, the American Association for the Advancement of Science (AAAS), the Association for Computing Machinery (ACM), and a life member of Institute of Electrical and Electronics Engineers. He is a STEM volunteer with the Senior Scientists and Engineers/AAAS Volunteer Program for K-12 science, technology, engineering, and mathematics education in the DC-area schools.
Cognitive Science, Computational Social Science, Social Cognition, Autonomy, Cognitive Robotics
My initial training was in cadastre and geodesy (B.Eng from the Distrital University, UD, Colombia). After earning my Master’s degree in Geography (UPTC, Colombia) in 2003, I worked for the “José Benito Vives de Andreis” marine and coastal research institute (INVEMAR) and for the International Center for Tropical Agriculture (CIAT). Three years later, in 2006, I left Colombia to come to Canada, where I began a PhD in Geography with a specialization in modelling complex systems at Simon Fraser University (SFU), under the direction of Dr. Suzana Dragicevic (SAMLab). In my dissertation I examined the topic of spatial and temporal modelling of insect epidemics and their complex behaviours. After obtaining my PhD in 2011, I began postdoctoral studies at the University of British Columbia (2011) and the University of Victoria (2011-2013), where I worked on issues concerning the spatial and temporal relationships between changes in indirect indicators of biodiversity and climate change.
I am an Associate Professor in the Department of Geography at the University of Montreal. My research interests center around the incorporation of artificial intelligence and machine learning techniques into the development Agent-Based Models to solve complex socio-ecological problems in different kind of systems, such as urban, forest and wetland ecosystems.
The core of my research projects aim to learn more about spatial and temporal interactions and relationships driving changes in our world, by focusing on the multidisciplinary nature of geographical information science (GIScience) to investigate the relationships between ecological processes and resulting spatial patterns. I integrate spatial analysis and modeling approaches from geographic information science (GIScience) together with computational intelligence methods and complex systems approaches to provide insights into complex problems such as climate change, landscape ecology and forestry by explicitly representing phenomena in their geographic context.
Specialties: Agent-based modeling, GIScience, Complex socio-environmental systems, Forestry, Ecology